sand_uncompress_reads(1)

NAME

sand_uncompress_reads - uncompress sequence data

SYNOPSIS

sand_uncompress_reads [-qvh] [infile] [outfile]

DESCRIPTION

sand_uncompress_reads reads sequence data in compressed FASTA (cfa) used by sand_filter_master(1) and sand_align_master(1). and produces output in the standard FASTA .

If the output file is omitted, standard output is used. if the input file is omitted, standard input is used. After completing the compression, this program will output a summary line of sequences and bytes compressed.

OPTIONS

-q Quiet mode: suppress summary line.
-h Display version information.
-v Show help text.

EXIT STATUS

On success, returns zero. On failure, returns non-zero.

EXAMPLES

To uncompress mydata.cfa into mydata.fasta:
% sand_uncompress_reads mydata.cfa mydata.fa

COPYRIGHT

The Cooperative Computing Tools are Copyright (C) 2003-2004 Douglas Thain and Copyright (C) 2005-2011 The University of Notre Dame. This software is distributed under the GNU General Public License. See the file COPYING for details.

SEE ALSO

  • Cooperative Computing Tools Documentation
  • SAND User Manual
  • sand_filter_master(1)
  • sand_filter_kernel(1)
  • sand_align_master(1)
  • sand_align_kernel(1)
  • sand_compress_reads(1)
  • sand_uncompress_reads(1)
  • work_queue_worker(1)

  • CCTools 3.7.0 released on 02/18/2013