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| Li, L. & Dowling, J. E. (1997). A dominant form of inherited retinal degeneration caused by a non-photoreceptor cell-specific mutation. Proc Natl Acad Sci USA 94, 11645-11650. |
| Li, L. & Dowling, J. E. (1998). Zebrafish visual sensitivity is regulated by a circadian clock. Visual Neurosci 15, 851-857. ( Cover photo ) |
| Losey, G.S., Cronin, T., Goldsmith, T.H., Hyde, D.R., Marshall, N.J., and McFarland, W.N. (1999). The UV visual world of fishes: a review. J. Fish Biol. 54: 921-943. |
| Vihtelic, T.S., C.J. Doro and D.R. Hyde (1999) Cloning and characterization of six zebrafish photoreceptor opsin cDNAs and immunolocalization of their corresponding proteins. Vis. Neurosci. 16: 571-585. |
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| Li, L. & Dowling, J. E. (2000). Disruption of the olfactoretinal centrifugal pathway may relate to the visual system defect in night blindness b mutant zebrafish. J Neurosci 20, 1883-1892. |
| Li, L. & Dowling, J. E. (2000). Effects of dopamine depletion on visual sensitivity of zebrafish. J Neurosci 20, 1893-1903. |
| Elagin, V.A., R.B. Elagina, C.J. Doro, T.S. Vihtelic, and D.R. Hyde (2000) Cloning and tissue localization of a novel zebrafish rdgB homolog that lacks a phospholipid transfer domain. Vis. Neurosci. 17: 303-311. |
| Vihtelic, T.S. and D.R Hyde (2000) Rod and cone photoreceptor cell death and regeneration in the intense-light-treated adult albino zebrafish (Danio rerio) retina. J. Neurobiology, 44: 289-307. |
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| Kennedy, B.N., T.S. Vihtelic, L. Checkley, and D.R. Hyde (2001) Isolation of a zebrafish rod opsin promoter to generate a transgenic zebrafish line expressing EGFP in rod photoreceptors. J. Biol. Chem., 276: 14037-14043. |
| Li, L. (2001). Genetic and epigenetic analysis of visual system functions of zebrafish. Prog Brain Res 131, 555-563. |
| Li, L. (2001). Zebrafish mutants: Behavioral genetic studies of visual system defects. Dev Dyn 221, 365-372. |
| Vihtelic, T.S., Y. Yamamoto, M.T. Sweeney, W.R. Jeffery, and D.R. Hyde. (2001) Arrested differentiation and epithelial cell degeneration in zebrafish lens mutants. Dev. Dynam. 222: 625-636. |
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| Ren, J. Q., McCarthy, W. R., Zhang, H., Adolph, A. R. & Li, L. (2002). Behavioral visual responses of wild-type and hypopigmented zebrafish. Vision Res 42, 293-299. |
| Vihtelic, T.S. and D.R. Hyde (2002) Zebrafish mutagenesis yields eye morphological mutants with retinal and lens defects. Vision Research, 42: 535-540. |
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| Maaswinkel, H. & Li, L. (2003). Spatio-temporal frequency characteristics of the optomotor response in zebrafish. Vision Res 43, 21-30. |
| Maaswinkel, H. & Li, L. (2003). Olfactory input increases visual sensitivity in zebrafish: A possible function for the terminal nerve and dopaminergic interplexiform cells. J Exp Biol 206, 2201-2209. |
| Maaswinkel, H., Mason, B. & Li, L. (2003). ENU-induced late onset night blindness associated with rod photoreceptor cell degeneration in zebrafish. Mech Age Dev 124, 1065-1071. |
| Maaswinkel, H., Ren, J. Q. & Li, L. (2003). Slow-progressing photoreceptor cell degeneration in night blindness c mutant zebrafish. J Neurocytol 32, 1107-1116. |
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| Ren, J. Q. & Li, L. (2004). Rod and cone signaling transmission in the retina of zebrafish: An ERG study. Intl J Neurosci 114, 259-270. |
| Wei, X., Cheng, Y., Luo, Y., Shi, X., Nelson, S., and Hyde D.R. (2004). The zebrafish Pard3 ortholog is required for separation of the eye fields and retinal lamination. Dev. Biol. 269: 286-301. |
| Ren, J. Q. & Li, L. (2004). A circadian clock regulates the process of ERG b- and d-wave dominance transition in dark-adapted zebrafish. Vision Res 44, 2147-2152. |
| Puppala, D., Maaswinkel, H., Mason, B., Legan, S. J. & Li, L. (2004). An in vivo microdialysis study of light/dark-modulation of vitreal dopamine release in zebrafish. J Neurocytol 33, 193-201. |
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| Li, P., Temple, S., Gao, Y., Haimberger, T. J., Hawryshyn, C. W. & Li, L. (2005). Circadian rhythms of behavioral cone sensitivity and long wavelength opsin mRNA expression: A correlation study in zebrafish. J Exp Biol 208, 497-504. |
| Vihtelic, T.S., Y. Yamamoto, S.S. Springer, W.R. Jeffery, and D.R. Hyde (2005) Lens opacity and photoreceptor degeneration in the zebrafish lens opaque mutant. Dev. Dynam. 233(1): 52-65. |
| Shi, X., D.V. Bosenko, N.S. Zinkevich, S. Foley, D.R. Hyde, E.V. Semina, and T.S. Vihtelic (2005) Zebrafish pitx3 is necessary for normal lens and retinal development. Mech Dev, 122(4): 513-527. |
| Gao, Y., Li, P. & Li, L. (2005). Transgenic zebrafish that express TH promoter in inner retinal cells. Dev Dyn 233, 921-929. |
| Maaswinkel, H., Riesbeck, L. E., Riley, M. E., Carr, A. L., Mullin, J. P., Nakamoto, A. & Li, L. (2005). Behavioral screening of night blindness mutants in zebrafish reveals three new loci that cause dominant photoreceptor cell degeneration. Mech Age Dev 126, 1079-1089. |
| Thummel, R., Burket, C.T., Brewer, J.L., Sarras, M.P., Li, L., Perry, M., McDermott, J.P., Sauer, B., Hyde, D.R., Godwin, A.R. (2005). Cre-mediated site-specific recombination in zebrafish embryos. Dev. Dyn. 233: 1366-1377. |
| Yu, C. J. & Li, L. (2005). Dopamine modulates voltage-activated potassium currents in zebrafish retinal ON bipolar cells. J Neurosci Res 82, 368-376. |
| Huang, L., Maaswinkel, H. & Li, L. (2005). Olfactoretinal centrifugal input modulates zebrafish retinal ganglion cell activity: A possible role for dopamine-mediated Ca signaling pathways. J Physiol (Lond) 569, 939-948. |
| Vihtelic, T.S., J.M. Fadool, J. Gao, K.A. Thornton, D.R. Hyde and G. Wistow (2005) Expressed sequence tag analysis of zebrafish eye tissues for NEIBank. Mol Vis, 11: 1083-100. |
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| Thummel, R., Bai, S., Sarras, M.P., Song, P., McDermott, J., Brewer, J., Perry, M., Zhang, X., Hyde, D.R., and Godwin, A.R. (2006). Inhibition of zebrafish fin regeneration using in vivo electroporation of morpholinos against fgfr1 and msxb. Dev. Dyn. 235: 336-346. |
| Wei, X., Luo, Y., and Hyde, D.R. (2006). Molecular cloning of three zebrafish lin7 genes and their expression patterns in the retina. Exp. Eye Res. 82:122-131. |
| Vihtelic, T.S., J.E. Soverly, S.C. Kassen and D.R. Hyde (2006) Regional differences in photoreceptor cell death and regeneration in light-lesioned albino zebrafish Exp Eye Res, 82: 558-575. |
| Huang, L. & Li, L. (2006). Differential expression of voltage-activated calcium currents in zebrafish retinal ganglion cells. J Neurosci Res 84, 497-504. |
| Li, L. & Maaswinkel, H. (2006). Visual sensitivity and signaling processing in teleosts. In: Sensory System Neuroscience (Eds: TJ Hara and BS Zielinski). Vol 25, p179-241. |
| Semina, E.V., Bosenko, D.V., Zenkevich, N.A., Soules, K.A., Hyde, D.R., Vihtelic, T.S., Willer, G.B., Gregg, R.G., and Link, B.A. (2006). Mutations in laminin alpha 1 result in complex, lens-independent ocular phenotypes in zebrafish. Dev. Bio. 299: 63-77. |
| Shi, X., Luo, Y., Howley, S., Dzialo, A., Foley, S., Hyde, D.R., and Vihtelic, T.S. (2006). Zebrafish foxe3: roles in lens morphogenesis through interaction with pitx3. Mech. Dev. 123: 761-782. |
| Thummel, R., Burket, C.T., and Hyde, D.R. (2006) Two different transgenes to study gene silencing and re-expression during zebrafish caudal fin and retinal regeneration. TSW Development & Embryology 1(S1), 65–81. DOI 10.1100/tswde.2006.275. |
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| Thummel, R., M. Ju, L. Li, M. P. Sarras, Jr., and A. R. Godwin. (2007) Both Hoxc13 orthologs are functionally important for zebrafish tail fin regeneration. Dev Genes Evol. 2007. Apr 17. |
| Yu, C.J., Gao, Y., Willis, C.L., Li, P., Tiano, J.P., Nakamura, P.A., Hyde, D.R., and Li, L. (2007). Mitogen-associated protein kinase- and protein kinase A-dependent regulation of rhodopsin promoter expression in zebrafish rod photoreceptor cells. J. Neurosci. Res. Feb 15;85(3):488-96. |
| Tawk, M., Araya, C., Lyons, D., Bayley, P., Hyde, D.R., Tada, M., and Clarke, J. (2007). A mirror-symmetric cell division that orchestrates neuroepithelial morphogenesis. Nature. 446:797-800. |
| Fimbel, S.M., Montgomery, J.E., Burket, C.T., and Hyde, D.R. (2007). Regeneration of inner retinal layers after intravitreal injection of ouabain in zebrafish. J. Neurosci. 27:1712-1724. |
| Kassen, S.C., Ramanan, V., Montgomery, J.E., Burket, C.T., Liu, C.G., Vihtelic, T.S., and Hyde, D.R. (2007). Time course analysis of gene expression during light-induced photoreceptor cell death and regeneration in albino zebrafish. Dev Neurobiol. 2007 Jul;67(8):1009-31. |
| Alvarez, Y., Cederlund, M.L., Cottell, D.C., Bill, B.R., Ekker, S.C., Torres-Vázquez, J., Weinstein, B.M., Hyde, D.R., Vihtelic, T.S., and Kennedy, B.N. (2007). Genetic determinants of hyaloid and retinal vasculature in zebrafish. BMC Dev. Biol. 7(1):114. |
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| Sherpa T, Fimbel, S.M., Mallory, D.E., Maaswinkel H., Spritzer, S.D., Sand, J.A., Li, L., Hyde, D.R., Stenkamp, D.L. (2008). Ganglion cell regeneration following whole-retina destruction in zebrafish. Dev Neurobiol. 2008 Feb 1;68(2):166-81. |
| Thummel, R., Kassen, S.C., Montgomery, J.E., Enright, J.M., Hyde, D.R. (2008) Inhibition of Müller glial cell division blocks regenration of the light-damaged zebrafish retina. Dev Neurobiol. 2008 Feb 15;68(3):392-408. |
| Yin, V.P., Thomson, J.M., Thummel, R., Hyde, D.R., Hammond, S.M., Poss, K.D. (2008) Fgf-dependent depletion of microRNA-133 promotes appendage regeneration in zebrafish. Genes Dev. 2008 Mar 15;22(6):700-5. |
| Burket, C.T., Montgomery, J.E., Thummel, R., Kassen, S.C., LaFave, M.C., Langenau, D.M., Zon, L.I., Hyde, D.R. (2008). Generation and characterization of transgenic zebrafish lines using different ubiquitous promoters. Transgenic Res. 2008 Apr:17(2):265-79. Epub 2007 Oct 30. |
| Harding, R.L., Howley, S., Baker, L.J., Murphy, T.R., Archer, W.E., Winstow, G., Hyde, D.R., Vihtelic, T.S. (2008). Lengsin expression and function during zebrafish lens formation. Exp Eye Res. 2008 May;86(5):807-818. Epub 2008 Mar 2. |
| Hoptak-Solga, A.D., Nielsen, S., Jain, I., Thummel, R., Hyde, D.R., Iovine, M.K. (2008) Connexin43 (GJA1) is required in the population of dividing cells during fin regeneration. Dev Biol. 2008 May 15;317(2):541-8. Epub 2008 Mar 12. |
| Kassen, S.C., Thummel, R. Burket, C.T., Campchiaro, L.A., Harding, M.J., and Hyde, D.R. (2008). The Tg(cyclin B1:EGFP) transgenic zebrafish line labels proliferating cells during retinal development and regeneration. Mol. Vis 14:950-962. |
| Thummel R., Kassen S.C., Enright, J.M., Nelson, C.M., Montgomery, J. E., and Hyde, D.R. (2008). Characterization of Muller glia and neuronal progenitors in zebrafish adult retinal regeneration. Exp. Eye Res. 87: 433-444. |
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| Calinescu, A.A., Vihtelic, T.S., Hyde, D.R., and Hitchcock, P.F. (2009). Cellular expression of midkine-a and midkine-b during retinal development and photoreceptor regeneration in zebrafish. J. Comp. Neurol. 514:1-10. |
| Kassen, S.C., Thummel, R. Campochiara, L.A., Harding, M.J., Bennet, N.A., and Hyde, D.R. (2009). CNTF induces photoreceptor neuroprotection and Muller glial cell proliferation through two different signaling pathways in the adult zebrafish retina. Exp. Eye Res. 88:1051-1064. |
| Yang, X., Zou, J., Hyde, D.R., Davidson, L., and Wei, X. (2009). Stepwise maturation of apicobasal polarity of the neuroepithelium is essential for vertebrate neurulation. J. Neurosci. 29: 11426 –11440. |
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| Montgomery, J.E., Parsons, M.J., and Hyde, D.R. (2010). A novel model of retinal ablation demonstrates that the origin of regenerated rod photoreceptors is dependent on the extent of damage. J. Comp. Neurol. 518: 800-814. |
| Craig, S.E.L., Thummel, R., Ahmed, H., Vasta, G.R., Hyde, D.R., and Hitchcock, P.F. (2010). The zebrafish galectin Drgal1-L2 is expressed by proliferating Müller glia and photoreceptor progenitors and regulates the regeneration of rod photoreceptors. IOVS. 51: 3244-3252. |
| Thummel, R., Enright, J.M., Kassen, S.C., Montgomery, J.E., Bailey, T.J., and Hyde, D.R. (2010). Pax6a and Pax6b are required at different points in neuronal progenitor cell proliferation during zebrafish photoreceptor regeneration. Exp. Eye Res. 90: 572-582. |
| Ile, K.E., Kassen, S., Cao, C., Vihtelic, T., Shah, S.D., Mousley, C.J., Alb, J.G., Huijbregts, R.P.H., Stearns, G.W., Brockerhoff, S.E., Hyde, D.R. and Bankaitis, V.A. (2010). Zebrafish Class 1 Phosphatidylinositol Transfer Proteins: PITPβ and Double Cone Cell Outer Segment Integrity in Retina. Traffic. 11: 1151-1167. |
| Bailey, T.J., Fossum, S.L., Fimbel, S.M., Montgomery, J.E., and Hyde, D.R. (2010). The inhibitor of phagocytosis, O-phospho-L-serine, suppresses Müller glia proliferation and cone cell regeneration in the light-damaged zebrafish retina. Exp. Eye Res. 91: 601-612. |
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| Thomas, J.L., Vihtelic, T.S., DenDekker, A.D., Willer, G., Luo, X., Murphy, T.R., Gregg, R.G., Hyde, D.R., and Thummel, R. (2011). The loss of vacuolar protein sorting 11 (vps11) causes retinal pathogenesis in a vertebrate model of syndromic albinism. IOVS 52: 3119-3128. |
| Murphy, T.R., Vihtelic, T.S., Ile, K.E., Watson, C.T., Willer, G.B., Gregg, R.G., Bankaitis, V.A., and Hyde, D.R. (2011). Phosphatidylinositol synthase is required for lens structural integrity and photoreceptor cell survival in the zebrafish eye. Exp. Eye Res. 93: 460-474. Cited in Faculty of 1000. |
| Qin, Z., Kidd, A.R., Thomas, J.L., Poss, K.D., Hyde, D.R., Raymond, P.A., and Thummel, R. (2011). FGF signaling regulates rod photoreceptor cell maintenance and regeneration in zebrafish. Exp. Eye Res. 93: 726-734. |
| Thummel, R. Bailey, T.J., and Hyde, D.R. (2011) In vivo electroporation of morpholinos into the adult zebrafish retina. J. Vis. Exp. 58, e3603. DOI: 10.3791/3603 (2011). |
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| Hyde, D.R., Goodwin, A.R., and Thummel, R. In vivo electroporation of morpholinos into the regenerating adult zebrafish tail fin. J. Vis. Exp. in press. |
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