Greg Madey's Home Page
Home
Courses
Research
Links
Students
Vita
Activities

Gregory R. Madey

EDUCATION

  • Ph.D., Operations Research, Case Institute of Technology, Case Western Reserve University (CWRU)
  • M.S., Operations Research, (CWRU)
  • M.S., Mathematics, Cleveland State University (CSU)
  • B.S., Mathematics, (CSU)

RESEARCH INTERESTS

  • Emergency Operations Management
  • Bioinformatics, Biocomplexity, Modeling Epidemiology, Health Informatics
  • Agent-Based Modeling & Simulation
  • Cyberinfrastructure, Virtual Research and Engineering Organizations, Collaboratories
  • e-Science, e-Engineering  & e-Commerce
  • Chaos and Complexity
  • Open Source Software
  • Data Warehousing, Data Mining & Web Mining
  • Web Services, Service Oriented Architecture
  • Large Scientific Databases

TEACHING

RECENT RESEARCH GRANTS

GRADUATE STUDENTS

  • Aaron Huus
  • Ryan McCune
  • Matt Van Antwerp
  • Ying Zhou
  • Cindy Nikolai
  • Zhi Zhai
  • S M Niaz Arifin
  • James Gentile

RECENT PUBLICATIONS (always out of date!)

  • "Citizen Engineering: Evolving OSS Practices to Engineering Design and Analysis", 8th International Conference on Open Source Systems, Hammamet, Tunisia – 10-13 September, 2012
  • "Haiti Earthquake Photo Tagging: Lessons on Crowdsourcing In-Depth Image Classifications",  Seventh International Conference on Digital Information Management (ICDIM 2012), August 22-24, 2012, Macau, China
  • "Crowdsourcing Highly Trustworthy Results", 45th Hawaii International Conference on System Science (HICSS), 2012
  • "Expert-Citizen Engineering: 'Crowdsourcing' Skilled Citizens"  2011 International Conference on Social Computing and its Applications (SCA2011) 12-14 December 2011, Sydney Australia
  • "An automated homology-based approach for identigying transposable elements", BMC Bioinformatics, 12:130, 2011. (online)
  • "Portals for collaborative research communities: two distinguishing case studies", Concurrency and Computation: Practice and Experience, 2: 269-278, 2011.
  • VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics, Nucleic Acids Research, Volume 40, Issue D1, Pp. D729-D734, 2011
  • "Discretionary Access Controls for a Collaborative Virtual Environment", The International Journal of Virtual Reality, 9(1) pp 61-71, 2010.
  • "The Importance of Social Network Structure in the Open Source Software Developer Community",  HICSS-43, Kauai, Hawaii, January 2010.
  • "Project Ensayo: Designing a Virtual Emergency Operations Center", IEEE International Conference on Systems, Man, and Cybernetics - Homeland Security, San Antonio, Texas, October 2009
  • "A GIS Aware Agent-Based Model of Pathogen Transmission," International Journal of Intelligent Control and Systems, Vol. 14, No. 1, March 2009, 51-61..
  • "Feature Clustering for Data Steering in Dynamic Data Driven Application Systems", Allen, G., et al.,  (Eds.): ICCS 2009, Part II, LNCS 5545, Springer-Verlag Berlin/Heidelberg, pp. 460–469, 2009
  • "Tools of the Trade: A Survey of Various Agent Based Modeling Platforms", Journal of Artificial Societies and Social Simulation 12(2)2, 31-Mar-2009 (online)
  • "Design and Implementation of An Agent-Based Simulation for Emergency Response and Crisis Management", Agent-Directed Simulation Symposium (ADS'09),  The Society for Modeling and Simulation International (SCS),  San Diego, March 2009.
  • "Spatially Aware Agents: An effective and efficient use of GIS data within an Agent-based Model", Agent-Directed Simulation Symposium (ADS'09),  The Society for Modeling and Simulation International (SCS),  San Diego, March 2009.
  • "Agent Based Modeling Toolkit Search Engine", Agent-Directed Simulation Symposium (ADS'09),  The Society for Modeling and Simulation International (SCS),  San Diego, March 2009.
  • "A Survey of Technologies for Building Collaborative Virtual Environments", The International Journal of Virtual Reality, 8(1): 53-66, 2009.
  • "VectorBase: a data resource for invertebrate vector genomics", Nucleic Acids Research. 2009 January; 37(Database issue): D583–D587
  • "Advances in the SourceForge Research Data Archive (SRDA)", The 4th International Conference on Open Source Systems, IFIP 2.13 - (WoPDaSD 2008),  Milan, Italy, September 2008.
  • "Evaluation of Measurement Techniques for the Validation of Agent-Based Simulations Against Streaming Data",  International Conference on Computational Science, Krakow,  June 2008
  • "WIPER: An Emergency Response System", ISCRAM2008, Washington, D.C., May 2008
  • "Explorations in Building a Virtual Emergency Operations Center using a Collaborative Virtual Environment", ISCRAM2008, Washington, D.C., May 2008
  • "Multiple Organism Algorithm for Finding Ultraconserved Elements", BMC Bioinformatics, Vol. 9, No. 15, January 2008. (pdf)
  • "Design and Development of a Virtual Emergency Operations Center for Disaster Management Research, Training, and Discovery", HICSS-41,  January 2008, Hawaii
  • "Anomaly Detection in a Mobile Communication Network", Computational & Mathematical Organization Theory, Vol. 13, No. 4, December 2007
  • "A stochastic model for the synthesis and degradation of natural organic matter part II: molecular property distributions", Biogeochemistry, Vol. 86, No. 3, December 2007
  • "Uncovering individual and collective human dynamics from mobile phone records", Journal of Physics A: Mathematical and Theoretical, forthcoming,  also, eprint arXiv: 0710.2939, October 2007
  • "Student Engineering Reaching Out: Case Studies in Service Learning and a Survey of Technical Need", Frontiers in Education (FIE-2007), October 2007, Milwaukee, WI.
  • "A stochastic model for the synthesis and degradation of natural organic matter. Part III: Modeling Cu(II) complexation", Applied Geochemistry, Volume 22, Issue 8, August 2007, 1646-1658
  • "Improving the Reuse of Scientific Workflows and Their By-products", IEEE International Conference on Web Services, July 2007, Salt Lake City, UT
  • "Project Ensayo: a Virtual Emergency Operations Center for Disaster Management Research, Training, and Discovery."  Presentation and Proceedings, The First International Conference on Global Defense and Business Continuity (ICGD&BC 2007),  July 2007, San Jose, CA.
  • "Network Analysis of the SourceForge.net Community", The Third International Conference on Open Source Systems (OSS 2007), IFIP WG 2.13, Limerick, Ireland, June 2007.
  • "Enhanced Situational Awareness: Application of DDDAS Concepts to Emergency and Disaster Management ", in International Conference on Computational Science, serial Lecture Notes in Computer Science, V. N. Alexandrov, G. D. van Albada, P. M. A. Sloot, and J. Dongarra, Eds., May 2007
  • "A Research Collaboratory for Open Source Software Research", In the Proceedings of the 29th International Conference on Software Enginering + Workshops (ICSE-ICSE Workshops 2007), International Workshop on Emerging Trends in FLOSS Research and Development (FLOSS 2007), Minneapolis, MN, May 2007
  • "VectorBase: a home for invertebrate vectors of human pathogens",  Nucleic Acids Research, 2007, Vol. 35, Database issue
  • "Towards understanding: study of the SourceForge.net community using modeling and simulation", Agent-Directed Simulation (ADS'07), The Society for Modeling and Simulation International (SCS),  Norfolk, VA, USA, March 25- 29, 2007
  • "A Service-oriented Data Integration and Analysis Environment for In-Silico Experiments and Bioinformatics Research", Proceedings of the 40th Annual Hawaii International Conference on System Sciences,  IEEE Computer Society Press, January 3-6 2007
  • "Analysis of activity in the open source software development community". In Proceedings of the 40th Annual Hawaii International Conference on System Sciences. IEEE Computer Society Press, January 3-6 2007
  • "WIPER: Leveraging the Cell Phone Network for Emergency Response", International Journal of Intelligent Control and Systems, Vol. 11, No. 4, Dec. 2006
  • "Application of Social Network Analysis to the Study of Open Source Software", The Economics of Open Source Software Development, eds. Jürgen Bitzer and Philipp J.H. Schröder, Elsevier Press, 2006.
  • "Modeling the Evolution of Natural Organic Matter in the Environment with an Agent-based Stochastic Approach", Natural Resource Modeling Journal, Spring 2006.
  • "Wiper: The integrated wireless phone based emergency response system." in International Conference on Computational Science, ser. Lecture Notes in Computer Science, V. N. Alexandrov, G. D. van Albada, P. M. A. Sloot, and J. Dongarra, Eds., vol. 3993. Springer, 2006, pp. 417–424.

Research Group Summer 2006

SERVICE

INDUSTRY: RESEARCH & MANAGEMENT

  • Director - Advanced Projects and Strategic Planning, Defense Systems, Loral Corporation (now part of Lockheed-Martin)
  • Manager - Systems Analysis, Defense Systems Division, Goodyear Aerospace Corporation
  • Engineering Analyst, Goodyear Aerospace Corporation
  • Systems Engineering - Ocean Systems, Gould Corporation (now part of Northop-Grumman)
  • Computer Scientist - Computer and Networking Division, NASA Glenn Research Center

Research Group Summer 2004

Research Group Summer 2003
  • "Abstract Process Model for Systems Biology", Agent-Directed Simulation (ADS 2006 - SpringSim'06), Huntsville, AL, April 2006.
  • "ABNNSIM: An Agent Based Modeling Approach to Simulating Neural Networks", Agent-Directed Simulation (ADS 2006 - SpringSim'06), Huntsville, AL, April 2006.
  • "A Topological Exploration of Self-Organizing Neural Network Structures Using Agent-Based Modeling", Agent-Directed Simulation (ADS 2006-SpringSim'06), Huntsville, AL, April 2006.
  • "The Knowledge Management Efficacy Of Matching Information Systems Development Methodologies With Application Characteristics - An Experimental Study", Journal of Systems and Software, January 2006.
  • "Designing Flexible Distributed Component Systems", in  The Development of Component-based Information Systems, eds., M. Lycett, S. de Cesare and R. Macredie, M.E. Sharpe Inc, 2005.
  • "A Stochastic Model for the Synthesis and Degradation of Natural Organic Matter. Part I. Data Structures and Reaction Kinetics",  Biogeochemistry, Springer, Volume 76, Number 2, November 2005, pp. 319 - 347.
  • "A Service Learning Program for CSE Students", The 2005 Frontiers in Education Conference (FIE 2005), Indianapolis, IN, October 2005
  • "Autonomic Web-Based Simulation", 38th Annual Simulation Symposium, San Diego, CA, April 2005.
  • "Verification and Validation of Agent-based Scientific Simulation Models", Agent-Directed Simulation Conference, San Diego, CA, April 2005.
  • "H-MAS: A Heterogeneous, Mobile, Ad-hoc Sensor-Network Agent Simulation Environment", Agent-Directed Simulation Conference, San Diego, CA, April 2005.
  • "Modeling and Simulation of the Open Source Software Community", Agent-Directed Simulation Conference, San Diego, CA, April 2005.
  • "Agent-based Scientific Simulation", IEEE Computing in Science & Engineering, Jan-Feb 2005, pp. 22-29.
  • "A Topological Analysis of the Open Source Software Development Community", The 38th Hawaii International Conference on Systems Science, Hawaii, January 2005.
  • "Modeling the F/OSS Community: A Quantitative Investigation",  in Free/Open Source Software Development, ed., Stephan Koch, Idea Publishing, 2004.
  • "A Web Portal for Environmental Research", ed. Arno Scharl, Environmental Online Communication, Springer, London, 2004.
  • "A self-manageable infrastructure for supporting Web-based simulations", 37th Annual Simulation Symposium, Arlington, VA, April 2004
  • "Simulation of Swarm Intelligence-Based Message Broadcast in Highly Mobile Ad Hoc Networks", 2004 Communication Networks and Distributed Systems Modeling and Simulation Conference (CNDS'04), San Diego, January 2004
  • "A Web-based Collaboratory for Supporting Environmental Science Research", Workshop on Applications, Products and Services of Web-based Support Systems at the Joint International Conference on Web Intelligence (2003 IEEE/WIC) and Intelligent Agent Technology, Halifax, Canada, October 2003, pp. 29-36.
  • "Understanding OSS as a Self-Organizing Process", The 2nd Workshop on Open Source Software Engineering at the 24th International Conference on Software Engineering (ICSE2002). Orlando, FL, 2002.
  • "Temporal representation and reasoning for workflow in engineering design change review," IEEE Transactions on Engineering Management,  Vol. 47, No. 4, pp. 485-492, 2000

Greg Madey's Web Site
University of
Notre Dame

 [Home] [Courses] [Research] [Links] [Students] [Vita] [Activities]

 [Notre Dame Home]   [COE Home]   [CSE Home]