Publications in Refereed Journals (Appeared or Accepted)

List of publications prior to 2011

Preprints

  • Z.-L. Xu, M. Kamocka, M. Alber and E. Rosen "Computatational Approaches to Studying Thrombus Development" , Arterioscler Thromb Vasc Biol. 31:500-505, 2011.
     
  • H. Du, Z.-L. Xu, J.D. Shrout and M. Alber "Multiscale Modeling of P. aeruginosa Swarming" , accepted in Mathematical Models and Methods in Applied Sciences, 2011.
     
  • E. Kim, O.V. Kim, K.R. Machlus, X. Liu, T. Kupaev, J. Lioi, A.S. Wolberg, D.Z. Chen, E.D. Rosen, Z.-L. Xu and M. Alber "Correlation between fibrin network structure and mechanical properties: an experimental and computational analysis", Soft Matter, 7:4983-4992, 2011.
     
  • Christopher R. Sweet, Santanu Chatterjee, Zhiliang Xu, Katharine Bisordi, Elliot D. Rosen, and Mark Alber "Modeling Platelet-Blood Flow Interaction Using Subcellular Element Langevin Method", accepted, Journal of the Royal Society Interface, 2011.
     
  • Zhiliang Xu, Yingjie Liu , Huijing Du, Guang Li and Chi-Wang Shu , " Point-wise Hierarchical Reconstruction for Discontinuous Galerkin and Finite Volume Methods for Solving Conservation Laws", accepted, J. Comput. Phys. 2011.
     
  • H. Du, Z.-L. Xu, M. Anyan, O. Kim, W.M. Leevy, J. Shrout and M. Alber, "High Density Waves of the Bacterium Pseudomonas aeruginosa in Propagation Swarms Result in Efficient Colonization of Surfaces", Biophysical Journal, 103:601-609, 2012.
     
  • C.W. Harvey, H. Du, Z.-L. Xu, D. Kaiser, I. Aranson and M. Alber, "Interconnected Cavernous Structure of Bacterial Fruiting Bodies", PLOS Computational Biology, 8(12):e1002850, 2012.
     
  • Oleg V. Kim, Zhiliang Xu, Elliot D. Rosen, Mark S. Alber, "Fibrin Networks Regulate Protein Transport during Thrombus Development", PLOS Computational Biology, 9(6):e1003095, 2013.
     
  • W. Hao, J.D. Hauenstein, C.-W. Shu, A.J. Sommese, Z.-L. Xu and Y.T. Zhang, “A homotopy method based on WENO schemes for solving steady state problems of hyperbolic conservation laws”, J. Comput. Phys. 250:332-346, 2013.
     
  • Balsara, DS; Meyer, C; Dumbser, M; Du, HJ and Xu, ZL, “Efficient implementation of ADER schemes for Euler and magnetohydrodynamical flows on structured meshes - Speed comparisons with Runge-Kutta methods”, J. Comput. Phys. 235: 934-969, 2013.
     
  • Z. Wu, Z.-L. Xu, O. Kim, and M. Alber, "Three-dimensional Model of Deformable Platelets Adhesion to Vessel Wall in Blood Flow" , Phil. Trans. R. Soc. A, 372(2021) 2014.
     
  • Z.-L. Xu, X.-Y. Cheng, Y. Liu, "A new Runge–Kutta discontinuous Galerkin method with conservation constraint to improve CFL condition for solving conservation laws", J. Comput. Phys. 278:348-377, 2014. DOI: 10.1016/j.jcp.2014.08.042
     
  • W. Hao, Z.-L. Xu, C. Liu, G. Lin, "A Fictitious Domain Method with a Hybrid Cell Model for Simulating Motion of Cells in Fluid Flow", J. Comput. Phys. 2014, DOI: 10.1016/j.jcp.2014.09.020
     
  • G. Tierra, J.P. Pavissich, R. Nerenberg, Z.L. Xu, M. Alber. "Multicomponent model of deformation and detachment of a biofilm under fluid flow". J. R. Soc. Interface. 12:20150045, 2015.
     
  • Z.L. Xu, D.S. Balsara, H.J. Du. "Divergence-Free WENO Reconstruction-Based Finite Volume Scheme for Solving Ideal MHD Equations on Triangular Meshes". Comm. in Comput. Phys. doi: 10.4208/cicp.050814.040915a, 2016.
     
  • Z.L. Xu, Y.J. Liu. "New Central and Central Discontinuous Galerkin Schemes on Overlapping Cells of Unstructured Grids for Solving Ideal Magnetohydrodynamic Equations with Globally Divergence-Free Magnetic Field" . J. Comput. Phys. 327:203-224, , 2016.
     
  • A. Nematbakhsha, W. Sun, P.A. Brodskiy, A. Amiri, C. Narciso, Z.L. Xu, J.J. Zartman, M. Alber. "Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia" PLOS Comput. Bio. 13(5): e1005533 2017.
     
  • P. Höök, R.I. Litvinov, O.V. Kim, S. Xu, Z.L. Xu, J.S. Bennett, M.S. Alber. "Strong Binding of Platelet Integrin αIIbβ3 to Fibrin Clots: Potential Target to Destabilize Thrombi" Scientific Reports. 7, 13001, 2017.
     
  • S. Xu, Z.L. Xu, O. Kim, R.I. Litvinov, J.W. Weisel, M. Alber. "Model Predictions of Deformation, Embolization, and Permeability of Partially Obstructive Blood Clots under Variable Shear Flow" Royal Society journal Interface, 14(136), pii: 20170441, 2017.
     
  • S. Xu, M. Alber, Z.L. Xu. "Three-phase Model of Visco-elastic Incompressible Fluid Flow and its Computational Implementation". Comm. Comput. Phys. 25(2):586-624, 2019.
     
  • S. Britton, O. Kim, F. Pancaldi, Z.L. Xu, R. Litvinov, J.W. Weisel, M. Alber. Contribution of Nascent Cohesive Fiber-Fiber Interactions to the Non-Linear Elasticity of Fibrin Networks under Tensile Load. Acta Biomaterialia, 94:514-523 https://doi.org/10.1016/j.actbio.2019.05.068, 2019 (accepted)
     
  • H. Du, Y.J. Liu, Y. Liu, Z.L. Xu. Well-balanced discontinuous Galerkin method for shallow water equations with constant subtraction techniques on unstructured meshes. 2019, J. Sci. Comput. (accepted)

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  • Publications on Google Scholar
     

    •   "Slides for CoMD3 group meeting"