Class Four - Wednesday, November 7, 2007
November 07,2007
Lecture
* Discuss Chapter 5: Searching for motifs, more file I/O, more string manipulation, regular expressions, counting nucleotides, and array manipulation
* Exercises at end of Chapter 5
Homework
* For the week of November 12: Read chapter 6 & 8; note, unless there is strong demand for it, we will skip chapter 7
* Try to do as many of the exercises at the end of Chapter 5 as you can; not to be turned in, just to discuss in class; students may be asked for their ideas on each exercise.
* Discuss Chapter 5: Searching for motifs, more file I/O, more string manipulation, regular expressions, counting nucleotides, and array manipulation
* Exercises at end of Chapter 5
Homework
* For the week of November 12: Read chapter 6 & 8; note, unless there is strong demand for it, we will skip chapter 7
* Try to do as many of the exercises at the end of Chapter 5 as you can; not to be turned in, just to discuss in class; students may be asked for their ideas on each exercise.
Class Three - Monday, November 5, 2007
November 05,2007
Lecture
* Online Perl reference
* Exercises at end of Chapter 4
* Discuss Chapter 5: Searching for motifs, more file I/O, more string manipulation, regular expressions, counting nucleotides, and array manipulation
* Exercises at end of Chapter 5
* Online Perl reference
* Exercises at end of Chapter 4
* Discuss Chapter 5: Searching for motifs, more file I/O, more string manipulation, regular expressions, counting nucleotides, and array manipulation
* Exercises at end of Chapter 5
Class Two - Wednesday, October 31, 2007
October 31,2007
Lecture
Status report on installing perl on student laptops
Perl documentation:
Reading from files
Arrays
Printing arrays
Scalar and List context
Exercises at end of Chapter 4
Homework
Read Chapters 1-6 in the textbook
Try to do as many of the exercises at the end of Chapter 4 as you can; not to be turned in, just to discuss in class; students may be asked for their ideas on each exercise.
Status report on installing perl on student laptops
Perl documentation:
Reading from files
Arrays
Printing arrays
Scalar and List context
Exercises at end of Chapter 4
Homework
Read Chapters 1-6 in the textbook
Try to do as many of the exercises at the end of Chapter 4 as you can; not to be turned in, just to discuss in class; students may be asked for their ideas on each exercise.
Class One - Monday, October 29, 2007
October 29,2007
Lecture
Introductions
Overview
Getting Started with Perl/BioPerl
Homework
Find, install, run a perl program on a computer of your choice
Download and unzip this file ==> begperlbio_all
Read Chapter 1 - 4
Introductions
Overview
Getting Started with Perl/BioPerl
Homework
Find, install, run a perl program on a computer of your choice
Download and unzip this file ==> begperlbio_all
Read Chapter 1 - 4