Shawn Gu's Notre Dame Page


Hi! I'm a PhD student in the Department of Computer Science and Engineering at Notre Dame University. I work in Professor Tijana Milenkovic's Complex Networks Lab. My current research involves network alignment, with a focus on protein-protein interaction networks. My CV can be found here.

I completed my B.A. in Computer Science and B.S. in Mathematics at Duke University in 2016.

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Publications

S. Gu and T. Milenković, "Graphlets versus node2vec and struc2vec in the task of network alignment", in Proceedings of the 14th International Workshop on Mining and Learning with Graphs (MLG) at the 24th ACM SIGKDD 2018 Conference on Knowledge Discovery & Data Mining (KDD), London, UK, August 19-23, 2018.

S. Gu, J. Johnson, F. Faisal, and T. Milenković, "From homogeneous to heterogeneous network alignment via colored graphlets", Nature Scientific Reports, 8, Article number: 12524, 2018.

Presentations and posters

S. Gu and T. Milenković, "Graphlets versus node2vec and struc2vec in the task of network alignment", International Workshop on Mining and Learning with Graphs (MLG) at the 24th ACM SIGKIDD 2018 Conference on Knowledge Discovery and Data Mining (KDD), London, UK, August 19-23, 2018. Poster.

S. Gu, J. Johnson, F. Faisal, and T. Milenković, "From homogeneous to heterogeneous network alignment", Network Biology (NetBio) COSI at the Intelligent Systems for Molecular Biology (ISMB), Chicago, IL, USA, July 6-10, 2018. Talk and poster.

S. Gu, J. Johnson, F. Faisal, and T. Milenković, "From homogeneous to heterogeneous network alignment", Personalized Medicine in the era of Big Data (NetMed) Satellite at the International School and Conference on Network Science (NetSci), Paris, France, June 11-15, 2018. Poster.

S. Gu, J. Johnson, F. Faisal, and T. Milenković, "Integrating topology and metadata in heterogeneous networks", Machine Learning in Network Science (MLNS) Satellite at the International School and Conference on Network Science (NetSci), Paris, France, June 11-15, 2018. Talk.

S. Gu, J. Johnson, F. Faisal, and T. Milenković, "From homogeneous to heterogeneous network alignment", International Workshop on Heterogeneous Network Analysis and Mining (HeteroNAM) at the International Conference on Web Search and Data Mining (WSDM), Los Angeles, CA, USA, Feb. 5-9, 2018. Talk.

S. Gu and T. Milenković, "From homogeneous to heterogeneous network alignment", Networks of Networks (Netonets) Satellite at the International School and Conference on Network Science (NetSci), Indianapolis, IN, USA, June 19–23, 2017. Talk and poster.

S. Gu and T. Milenković, "From homogeneous to heterogeneous network alignment", Great Lakes Bioinformatics Conference (GLBIO), Chicago, IL, USA, May 15-17, 2017. Talk and poster.

Contact

Shawn Gu
247A Fitzpatrick Hall
Notre Dame, IN 46556

Email: sgu3 at nd dot edu